A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6865540



Internal ID9915782
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:31246348..31321757hg38UCSC Ensembl
Outerchr6:31214125..31289534hg19UCSC Ensembl
Cytoband6p21.33
Allele length
AssemblyAllele length
hg3875410
hg1975410
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2731814, esv2731815, esv2731812, esv2731817
Supporting Variants
SamplesSSM089
Known GenesHLA-C
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6865540
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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