A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6849527



Internal ID9901370
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr7:53868335..55917254hg38UCSC Ensembl
Outerchr7:53936028..55984947hg19UCSC Ensembl
Cytoband7p11.2
Allele length
AssemblyAllele length
hg382048920
hg192048920
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2734425
Supporting Variants
SamplesSSM086
Known GenesEGFR, EGFR-AS1, FKBP9L, HPVC1, LANCL2, LOC285878, SEC61G, SEPT14, VOPP1, VSTM2A, ZNF713
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6849527
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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