A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6819709



Internal ID9637893
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr2:45792872..45810252hg38UCSC Ensembl
Outerchr2:46020011..46037391hg19UCSC Ensembl
Cytoband2p21
Allele length
AssemblyAllele length
hg3817381
hg1917381
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2720011
Supporting Variants
SamplesSSM002
Known GenesPRKCE
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6819709
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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