A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6817223



Internal ID10221863
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr3:38877624..38877707hg38UCSC Ensembl
Outerchr3:38919115..38919198hg19UCSC Ensembl
Cytoband3p22.2
Allele length
AssemblyAllele length
hg3884
hg1984
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2725173, esv2725167, esv2725170, esv2725172
Supporting Variants
SamplesSSM078
Known GenesSCN11A
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6817223
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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