A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6733939



Internal ID10144194
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr3:195619267..195725499hg38UCSC Ensembl
Outerchr3:195346138..195452370hg19UCSC Ensembl
Cytoband3q29
Allele length
AssemblyAllele length
hg38106233
hg19106233
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2726477
Supporting Variants
SamplesSSM049
Known GenesMIR570, MUC20, SDHAP2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6733939
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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