A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6714422



Internal ID9779774
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:230275799..230276201hg38UCSC Ensembl
Outerchr1:230411545..230411947hg19UCSC Ensembl
Cytoband1q42.13
Allele length
AssemblyAllele length
hg38403
hg19403
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2724606
Supporting Variants
SamplesSSM043
Known GenesGALNT2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6714422
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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