A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6711789



Internal ID9777698
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:30404802..31253950hg38UCSC Ensembl
Outerchr6:30372579..31221727hg19UCSC Ensembl
Cytoband6p21.33
Allele length
AssemblyAllele length
hg38849149
hg19849149
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2731791
Supporting Variants
SamplesSSM042
Known GenesABCF1, ATAT1, C6orf136, C6orf15, CCHCR1, CDSN, DDR1, DHX16, DPCR1, FLOT1, GNL1, GTF2H4, HCG22, HCG27, HLA-E, IER3, MDC1, MIR4640, MIR877, MRPS18B, MUC21, MUC22, NRM, POU5F1, PPP1R10, PPP1R18, PRR3, PSORS1C1, PSORS1C2, PSORS1C3, SFTA2, TCF19, TUBB, VARS2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6711789
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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