A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6709478



Internal ID9774713
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr12:11021829..11133559hg38UCSC Ensembl
Outerchr12:11174428..11286158hg19UCSC Ensembl
Cytoband12p13.2
Allele length
AssemblyAllele length
hg38111731
hg19111731
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2745547
Supporting Variants
SamplesSSM041
Known GenesPRH1-PRR4, TAS2R19, TAS2R30, TAS2R31, TAS2R43, TAS2R46
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6709478
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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