A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6705025



Internal ID10118004
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:32640383..32744321hg38UCSC Ensembl
Outerchr6:32608160..32712098hg19UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg38103939
hg19103939
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2731864
Supporting Variants
SamplesSSM040
Known GenesHLA-DQA1, HLA-DQA2, HLA-DQB1
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6705025
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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