A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6702409



Internal ID9767436
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr12:2685972..2742204hg38UCSC Ensembl
Outerchr12:2795138..2851370hg19UCSC Ensembl
Cytoband12p13.33
Allele length
AssemblyAllele length
hg3856233
hg1956233
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2745416
Supporting Variants
SamplesSSM039
Known GenesCACNA1C, CACNA1C-AS1
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6702409
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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