A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6697895



Internal ID9765660
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:29890781..30009689hg38UCSC Ensembl
Outerchr6:29858558..29977466hg19UCSC Ensembl
Cytoband6p22.1
Allele length
AssemblyAllele length
hg38118909
hg19118909
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2740986
Supporting Variants
SamplesSSM038
Known GenesHCG4B, HCG9, HLA-A, HLA-H, HLA-J, ZNRD1-AS1
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6697895
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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