A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6682544



Internal ID9748582
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr19:21934241..22934120hg38UCSC Ensembl
Outerchr19:22117043..23116922hg19UCSC Ensembl
Cytoband19p12
Allele length
AssemblyAllele length
hg38999880
hg19999880
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2718342, esv2718349, esv2718337
Supporting Variants
SamplesSSM033
Known GenesLOC100996349, LOC440518, ZNF208, ZNF257, ZNF492, ZNF676, ZNF729, ZNF98, ZNF99
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6682544
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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