A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6678554



Internal ID9994459
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:32523094..32559183hg38UCSC Ensembl
Outerchr6:32490871..32526960hg19UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg3836090
hg1936090
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2731844, esv2731846, esv2731839, esv2731842, esv2731847, esv2731835, esv2731837
Supporting Variants
SamplesSSM005
Known GenesHLA-DRB5, HLA-DRB6
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6678554
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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