A curated catalogue of human genomic structural variation




Variant Details

Variant: essv64070



Internal ID10978348
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr22:21115148..21128303hg38UCSC Ensembl
Innerchr22:21469437..21482592hg19UCSC Ensembl
Innerchr22:19799437..19812592hg18UCSC Ensembl
Cytoband22q11.21
Allele length
AssemblyAllele length
hg3813156
hg1913156
hg1813156
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv11089
Supporting Variants
SamplesNA07045
Known GenesBCRP2
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv64070
Frequency
Sample Size40
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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