A curated catalogue of human genomic structural variation




Variant Details

Variant: essv63496



Internal ID10996886
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:32017409..32023207hg38UCSC Ensembl
Innerchr6:31985186..31990984hg19UCSC Ensembl
Innerchr6:32093164..32098962hg18UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg385799
hg195799
hg185799
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv11132
Supporting Variants
SamplesNA15510
Known GenesC4A, C4B, C4B_2
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv63496
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer