A curated catalogue of human genomic structural variation




Variant Details

Variant: essv58989



Internal ID11015651
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:10416732..10451149hg38UCSC Ensembl
Innerchr12:10569331..10603748hg19UCSC Ensembl
Innerchr12:10460598..10495015hg18UCSC Ensembl
Cytoband12p13.2
Allele length
AssemblyAllele length
hg3834418
hg1934418
hg1834418
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv12565
Supporting Variants
SamplesNA19108
Known GenesKLRC1, KLRC2, KLRC3
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv58989
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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