A curated catalogue of human genomic structural variation




Variant Details

Variant: essv57777



Internal ID10981519
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:76027416..76056627hg38UCSC Ensembl
Innerchr4:76948569..76977780hg19UCSC Ensembl
Innerchr4:77167593..77196804hg18UCSC Ensembl
Cytoband4q21.1
Allele length
AssemblyAllele length
hg3829212
hg1929212
hg1829212
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv19222
Supporting Variants
SamplesNA11993
Known GenesART3, CXCL11
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv57777
Frequency
Sample Size40
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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