A curated catalogue of human genomic structural variation




Variant Details

Variant: essv55916



Internal ID10994608
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr22:29388814..29393650hg38UCSC Ensembl
Innerchr22:29784803..29789639hg19UCSC Ensembl
Innerchr22:28114803..28119639hg18UCSC Ensembl
Cytoband22q12.2
Allele length
AssemblyAllele length
hg384837
hg194837
hg184837
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv16905
Supporting Variants
SamplesNA12776
Known Genes
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv55916
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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