A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5390467



Internal ID8482202
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr19:422719..424211hg38UCSC Ensembl
Outerchr19:422719..424211hg19UCSC Ensembl
Outerchr19:373719..375211hg18UCSC Ensembl
Cytoband19p13.3
Allele length
AssemblyAllele length
hg381493
hg191493
hg181493
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2497793
Supporting Variants
SamplesNA18507
Known GenesSHC2
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5390467
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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