A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5371721



Internal ID8463456
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:52927879..52932898hg38UCSC Ensembl
Outerchr6:52792677..52797696hg19UCSC Ensembl
Outerchr6:52900636..52905655hg18UCSC Ensembl
Cytoband6p12.1
Allele length
AssemblyAllele length
hg385020
hg195020
hg185020
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2507253
Supporting Variants
SamplesNA18507
Known Genes
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5371721
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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