A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5366828



Internal ID8458563
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:160466920..160468335hg38UCSC Ensembl
Outerchr1:160436710..160438125hg19UCSC Ensembl
Outerchr1:158703334..158704749hg18UCSC Ensembl
Cytoband1q23.2
Allele length
AssemblyAllele length
hg381416
hg191416
hg181416
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2566827
Supporting Variants
SamplesNA18507
Known Genes
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5366828
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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