A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5361940



Internal ID8106989
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:111902795..111909432hg38UCSC Ensembl
Outerchr6:112223998..112230635hg19UCSC Ensembl
Outerchr6:112330691..112337328hg18UCSC Ensembl
Cytoband6q21
Allele length
AssemblyAllele length
hg386638
hg196638
hg186638
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2458162
Supporting Variants
SamplesNA18507
Known Genes
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5361940
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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