A curated catalogue of human genomic structural variation




Variant Details

Variant: essv53599



Internal ID11348811
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:42796434..42825104hg38UCSC Ensembl
Innerchr9:44146015..44174685hg19UCSC Ensembl
Innerchr9:44086011..44114681hg18UCSC Ensembl
Cytoband9p11.2
Allele length
AssemblyAllele length
hg3828671
hg1928671
hg1828671
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv12488
Supporting Variants
SamplesNA18508
Known Genes
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv53599
Frequency
Sample Size40
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer