A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5359390



Internal ID8104439
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr4:9980807..9981753hg38UCSC Ensembl
Outerchr4:9982431..9983377hg19UCSC Ensembl
Outerchr4:9591529..9592475hg18UCSC Ensembl
Cytoband4p16.1
Allele length
AssemblyAllele length
hg38314
hg19314
hg18314
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2425297
Supporting Variants
SamplesNA18507
Known GenesSLC2A9
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5359390
Frequency
Sample Size1
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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