A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5341460



Internal ID8433195
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr5:94580315..94582029hg38UCSC Ensembl
Outerchr5:93916020..93917734hg19UCSC Ensembl
Outerchr5:93941776..93943490hg18UCSC Ensembl
Cytoband5q15
Allele length
AssemblyAllele length
hg381715
hg191715
hg181715
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2534212
Supporting Variants
SamplesNA18507
Known GenesKIAA0825
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5341460
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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