A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5330053



Internal ID8421788
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr3:9853516..9856163hg38UCSC Ensembl
Outerchr3:9895200..9897847hg19UCSC Ensembl
Outerchr3:9870200..9872847hg18UCSC Ensembl
Cytoband3p25.3
Allele length
AssemblyAllele length
hg382648
hg192648
hg182648
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2437113
Supporting Variants
SamplesNA18507
Known Genes
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5330053
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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