A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5315825



Internal ID8407560
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr15:44491755..44493455hg38UCSC Ensembl
Outerchr15:44783953..44785653hg19UCSC Ensembl
Outerchr15:42571245..42572945hg18UCSC Ensembl
Cytoband15q15.3
Allele length
AssemblyAllele length
hg381701
hg191701
hg181701
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2449630
Supporting Variants
SamplesNA18507
Known GenesCTDSPL2
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5315825
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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