A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5309977



Internal ID8401712
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:157657512..157659173hg38UCSC Ensembl
Outerchr1:157627302..157628963hg19UCSC Ensembl
Outerchr1:155893926..155895587hg18UCSC Ensembl
Cytoband1q23.1
Allele length
AssemblyAllele length
hg381662
hg191662
hg181662
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2579180
Supporting Variants
SamplesNA18507
Known Genes
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5309977
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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