A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5307062



Internal ID8398797
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr9:107664998..107669931hg38UCSC Ensembl
Outerchr9:110427279..110432212hg19UCSC Ensembl
Outerchr9:109467100..109472033hg18UCSC Ensembl
Cytoband9q31.2
Allele length
AssemblyAllele length
hg384934
hg194934
hg184934
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2505970
Supporting Variants
SamplesNA18507
Known Genes
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5307062
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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