A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5274761



Internal ID8366496
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr3:169988665..169989623hg38UCSC Ensembl
Outerchr3:169706453..169707411hg19UCSC Ensembl
Outerchr3:171189147..171190105hg18UCSC Ensembl
Cytoband3q26.2
Allele length
AssemblyAllele length
hg38320
hg19320
hg18320
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2494675
Supporting Variants
SamplesNA18507
Known GenesSEC62
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5274761
Frequency
Sample Size1
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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