A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5247474



Internal ID8339209
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr10:91055086..91056647hg38UCSC Ensembl
Outerchr10:92814843..92816404hg19UCSC Ensembl
Outerchr10:92804823..92806384hg18UCSC Ensembl
Cytoband10q23.31
Allele length
AssemblyAllele length
hg381562
hg191562
hg181562
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2619018
Supporting Variants
SamplesNA18507
Known GenesLINC00502
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5247474
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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