A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5239007



Internal ID8330742
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr4:94576855..94578455hg38UCSC Ensembl
Outerchr4:95498006..95499606hg19UCSC Ensembl
Outerchr4:95717029..95718629hg18UCSC Ensembl
Cytoband4q22.3
Allele length
AssemblyAllele length
hg381601
hg191601
hg181601
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2492606
Supporting Variants
SamplesNA18507
Known GenesPDLIM5
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5239007
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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