A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5227135



Internal ID7972184
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr7:28556280..28557748hg38UCSC Ensembl
Outerchr7:28595898..28597366hg19UCSC Ensembl
Outerchr7:28562423..28563891hg18UCSC Ensembl
Cytoband7p15.1
Allele length
AssemblyAllele length
hg381469
hg191469
hg181469
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2470943
Supporting Variants
SamplesNA18507
Known GenesCREB5
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5227135
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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