A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5220600



Internal ID8312335
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr15:64240004..64241428hg38UCSC Ensembl
Outerchr15:64532203..64533627hg19UCSC Ensembl
Outerchr15:62319256..62320680hg18UCSC Ensembl
Cytoband15q22.31
Allele length
AssemblyAllele length
hg381425
hg191425
hg181425
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2551673
Supporting Variants
SamplesNA18507
Known GenesCSNK1G1
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5220600
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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