A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5198616



Internal ID8290351
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:166083619..166089949hg38UCSC Ensembl
Outerchr6:166497107..166503437hg19UCSC Ensembl
Outerchr6:166417097..166423427hg18UCSC Ensembl
Cytoband6q27
Allele length
AssemblyAllele length
hg386331
hg196331
hg186331
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2535789
Supporting Variants
SamplesNA18507
Known Genes
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5198616
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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