A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5197839



Internal ID8289574
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr20:55859043..55866340hg38UCSC Ensembl
Outerchr20:54434099..54441396hg19UCSC Ensembl
Outerchr20:53867506..53874803hg18UCSC Ensembl
Cytoband20q13.2
Allele length
AssemblyAllele length
hg387298
hg197298
hg187298
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2572718
Supporting Variants
SamplesNA18507
Known Genes
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5197839
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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