A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5193758



Internal ID8285493
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr13:52229551..52320894hg38UCSC Ensembl
Innerchr13:52803686..52895029hg19UCSC Ensembl
Innerchr13:51701687..51793030hg18UCSC Ensembl
Cytoband13q14.3
Allele length
AssemblyAllele length
hg3891344
hg1991344
hg1891344
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2453475
Supporting Variants
SamplesNA18507
Known Genes
MethodSequencing
AnalysisCopy number variations are detected using the SOLiD Human CNV Tool. Regions with poor mappability are filtered out from consideration and a log ratio of coverage is used to determine areas of increased copy number. A Hidden Markov Model converts increased coverage into discrete copy number states.
PlatformNot specified
CommentsoriginalFile=Yoruban_cnv.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5193758
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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