A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5184784



Internal ID8276519
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr4:79966532..79973836hg38UCSC Ensembl
Outerchr4:80887686..80894990hg19UCSC Ensembl
Outerchr4:81106710..81114014hg18UCSC Ensembl
Cytoband4q21.21
Allele length
AssemblyAllele length
hg387305
hg197305
hg187305
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2499655
Supporting Variants
SamplesNA18507
Known GenesANTXR2
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5184784
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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