A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5173352



Internal ID8265087
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr15:43367524..43369149hg38UCSC Ensembl
Outerchr15:43659722..43661347hg19UCSC Ensembl
Outerchr15:41447014..41448639hg18UCSC Ensembl
Cytoband15q15.3
Allele length
AssemblyAllele length
hg381626
hg191626
hg181626
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2618501
Supporting Variants
SamplesNA18507
Known GenesZSCAN29
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5173352
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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