A curated catalogue of human genomic structural variation




Variant Details

Variant: essv5171762



Internal ID8263497
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr3:129328573..129330484hg38UCSC Ensembl
Outerchr3:129047416..129049327hg19UCSC Ensembl
Outerchr3:130530106..130532017hg18UCSC Ensembl
Cytoband3q21.3
Allele length
AssemblyAllele length
hg381912
hg191912
hg181912
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2522545
Supporting Variants
SamplesNA18507
Known Genes
MethodSequencing
AnalysisLarger insertions and deletions are found by looking at variation in mate pair distances in the 2x50 mate pair libraries. These data are included in separate files for each of three coverage values: 2.2x, 4.0x, 5.6x, and 8.4x
PlatformNot specified
CommentsoriginalFile=Yoruban_large_indels_8.4x.gff
ReferenceMcKernan_et_al_2009
Pubmed ID19546169
Accession Number(s)essv5171762
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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