A curated catalogue of human genomic structural variation




Variant Details

Variant: essv50526



Internal ID11003529
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:16680907..16725201hg38UCSC Ensembl
Innerchr1:17007402..17051696hg19UCSC Ensembl
Innerchr1:16879989..16924283hg18UCSC Ensembl
Cytoband1p36.13
Allele length
AssemblyAllele length
hg3844295
hg1944295
hg1844295
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv11265
Supporting Variants
SamplesNA18517
Known GenesESPNP, MIR3675
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv50526
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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