A curated catalogue of human genomic structural variation




Variant Details

Variant: essv4992464



Internal ID7578096
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:43583657..43585750hg38UCSC Ensembl
Outerchr12:43583454..43585948hg38UCSC Ensembl
Innerchr12:43977460..43979553hg19UCSC Ensembl
Outerchr12:43977257..43979751hg19UCSC Ensembl
Innerchr12:42263727..42265820hg18UCSC Ensembl
Outerchr12:42263524..42266018hg18UCSC Ensembl
Cytoband12q12
Allele length
AssemblyAllele length
hg382495
hg192495
hg182495
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2235208
Supporting Variants
SamplesNA18507
Known Genes
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)essv4992464
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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