Variant Details

Variant: essv4981864

Internal ID

7567496

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr6:142204674..142204689	hg38	UCSC Ensembl
Outer	chr6:142204466..142204893	hg38	UCSC Ensembl
Inner	chr6:142525811..142525826	hg19	UCSC Ensembl
Outer	chr6:142525603..142526030	hg19	UCSC Ensembl
Inner	chr6:142567504..142567519	hg18	UCSC Ensembl
Outer	chr6:142567296..142567723	hg18	UCSC Ensembl

Cytoband

6q24.1

Allele length

Assembly	Allele length
hg38	428
hg19	428
hg18	428

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2065068

Supporting Variants

Samples

NA18507

Known Genes

VTA1

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4981864

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a