A curated catalogue of human genomic structural variation




Variant Details

Variant: essv4979081



Internal ID7564713
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:68781071..68781121hg38UCSC Ensembl
Outerchr12:68780884..68781317hg38UCSC Ensembl
Innerchr12:69174851..69174901hg19UCSC Ensembl
Outerchr12:69174664..69175097hg19UCSC Ensembl
Innerchr12:67461118..67461168hg18UCSC Ensembl
Outerchr12:67460931..67461364hg18UCSC Ensembl
Cytoband12q15
Allele length
AssemblyAllele length
hg38434
hg19434
hg18434
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2278507
Supporting Variants
SamplesNA18507
Known Genes
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)essv4979081
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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