Variant Details

Variant: essv4975270

Internal ID

7214216

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr17:73373817..73374744	hg38	UCSC Ensembl
Outer	chr17:73373753..73374820	hg38	UCSC Ensembl
Inner	chr17:71369956..71370883	hg19	UCSC Ensembl
Outer	chr17:71369892..71370959	hg19	UCSC Ensembl
Inner	chr17:68881551..68882478	hg18	UCSC Ensembl
Outer	chr17:68881487..68882554	hg18	UCSC Ensembl

Cytoband

17q25.1

Allele length

Assembly	Allele length
hg38	1068
hg19	1068
hg18	1068

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2415749

Supporting Variants

Samples

NA18507

Known Genes

SDK2

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4975270

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a