Variant Details

Variant: essv4966750

Internal ID

7552382

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr21:33876105..33876179	hg38	UCSC Ensembl
Outer	chr21:33875956..33876388	hg38	UCSC Ensembl
Inner	chr21:35248409..35248483	hg19	UCSC Ensembl
Outer	chr21:35248260..35248692	hg19	UCSC Ensembl
Inner	chr21:34170279..34170353	hg18	UCSC Ensembl
Outer	chr21:34170130..34170562	hg18	UCSC Ensembl

Cytoband

21q22.11

Allele length

Assembly	Allele length
hg38	433
hg19	433
hg18	433

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2419803

Supporting Variants

Samples

NA18507

Known Genes

ITSN1

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4966750

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a