Variant Details

Variant: essv4958409

Internal ID

7197355

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr12:10088447..10088467	hg38	UCSC Ensembl
Outer	chr12:10088230..10088673	hg38	UCSC Ensembl
Inner	chr12:10241046..10241066	hg19	UCSC Ensembl
Outer	chr12:10240829..10241272	hg19	UCSC Ensembl
Inner	chr12:10132313..10132333	hg18	UCSC Ensembl
Outer	chr12:10132096..10132539	hg18	UCSC Ensembl

Cytoband

12p13.2

Allele length

Assembly	Allele length
hg38	444
hg19	444
hg18	444

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2275947

Supporting Variants

Samples

NA18507

Known Genes

CLEC1A

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4958409

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a