A curated catalogue of human genomic structural variation




Variant Details

Variant: essv4951472



Internal ID7537104
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr8:30534777..30535064hg38UCSC Ensembl
Outerchr8:30534575..30535267hg38UCSC Ensembl
Innerchr8:30392294..30392581hg19UCSC Ensembl
Outerchr8:30392092..30392784hg19UCSC Ensembl
Innerchr8:30511836..30512123hg18UCSC Ensembl
Outerchr8:30511634..30512326hg18UCSC Ensembl
Cytoband8p12
Allele length
AssemblyAllele length
hg38693
hg19693
hg18693
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2367432
Supporting Variants
SamplesNA18507
Known GenesRBPMS
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)essv4951472
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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