Variant Details

Variant: essv4950629

Internal ID

7536261

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr11:128940246..128940323	hg38	UCSC Ensembl
Outer	chr11:128940072..128940501	hg38	UCSC Ensembl
Inner	chr11:128810141..128810218	hg19	UCSC Ensembl
Outer	chr11:128809967..128810396	hg19	UCSC Ensembl
Inner	chr11:128315351..128315428	hg18	UCSC Ensembl
Outer	chr11:128315177..128315606	hg18	UCSC Ensembl

Cytoband

11q24.3

Allele length

Assembly	Allele length
hg38	430
hg19	430
hg18	430

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2097474

Supporting Variants

Samples

NA18507

Known Genes

TP53AIP1

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4950629

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a