Variant Details

Variant: essv4937650

Internal ID

7176596

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr2:241108967..241109148	hg38	UCSC Ensembl
Outer	chr2:241108872..241109230	hg38	UCSC Ensembl
Inner	chr2:242048382..242048563	hg19	UCSC Ensembl
Outer	chr2:242048287..242048645	hg19	UCSC Ensembl
Inner	chr2:241697055..241697236	hg18	UCSC Ensembl
Outer	chr2:241696960..241697318	hg18	UCSC Ensembl

Cytoband

2q37.3

Allele length

Assembly	Allele length
hg38	359
hg19	359
hg18	359

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv1931784

Supporting Variants

Samples

NA18507

Known Genes

PASK

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4937650

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a